Chipotle Chicken Quesadillas

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These quesadillas are filled with gooey melted cheddar, shredded chicken and a smoky chipotle-tomato sauce.

chipotle chicken quesadillas on serving platter

Crisp flour tortillas stuffed with gooey melted cheddar and tender shredded chicken, all smothered in a sweet, smoky, and savory chipotle sauce—these could easily claim the title of the world’s best quesadillas! Think of them a gourmet twist on my classic chicken quesadillas—I’m a fan of those too, particularly for kids, but these are truly in their own league. The recipe is adapted from Curtis Stone, one of my favorite chefs and cookbook authors.

“Sweet Lord these were amazing!”

Lisa

What You’ll Need To Make Chipotle Chicken Quesadillas

chipotle chicken quesadillas ingredients
  • Red onion, garlic, and scallions: These aromatics form the flavor base, adding depth and a slight sweetness to counter the heat of the peppers.
  • Chipotle peppers in adobo sauce: Provide a smoky, spicy flavor that is the signature of these quesadillas. They add heat and a rich, complex taste. See the FAQs to learn more about these peppers.
  • Tomatoes: Offer a fresh, acidic, and slightly sweet component that balances the smokiness of the chipotle peppers and also adds moisture to the sauce.
  • Honey: Adds sweetness to balance the heat from the chipotle peppers and the acidity of the tomatoes.
  • Cooked shredded chicken: Serves as the protein base; you can use leftover or rotisserie chicken and either white or dark meat based on your preference.
  • Cilantro: Brings a fresh, herbal element that brightens the dish and pairs well with the other flavors.
  • Flour tortillas: Act as the casing for the quesadillas, holding all the ingredients together. They crisp up when cooked, adding a satisfying texture.
  • Shredded sharp cheddar cheese: Melts into the quesadillas, adding a rich, creamy texture and a tangy flavor that complements the spicy and smoky elements.
  • Jump to the printable recipe for precise measurements

Step-by-Step Instructions

Begin by cooking the red onions and garlic in olive oil.

cooking the red onions and garlic in olive oil in a skillet

Add the diced tomatoes and minced chipotle peppers.

tomatoes and chipotle peppers in adobo added to skillet

Cook until the liquid is gone and the mixture is thickened.

sauce for chipotle chicken quesadillas

Stir in the shredded chicken, salt, honey, green onions and cilantro. Keep the filling warm while you prepare the quesadillas. (Note: the chicken mixture can be made up to two days ahead of time.)

shredded chicken added to the sauce in the skillet

Heat a flour tortilla on a griddle or in a sauté pan. Cover the entire tortilla with cheese and spread the filling over one side.

cooking the quesadilla in a skillet

When the cheese is mostly melted, fold the tortilla over the filling into a half-moon shape.

folded quesadilla in skillet

Cook until crisp and golden, a few minutes per side. Repeat with the remaining tortillas. Serve immediately with sour cream and lime wedges, if desired.

Frequently Asked Questions

What are chipotle peppers in adobo sauce?

Canned chipotle peppers in adobo sauce are typically small peppers, often red jalapeños, that have been dried, smoked, and then preserved in a spicy, smoky tomato sauce. You can usually find them in the Latin section of most supermarkets. If you’re looking for more ways to use them, try my chipotle honey vinaigrette and black bean and corn salad.

chopped chipotle pepper in adobo on marble cutting board

How can I make these less spicy?

This recipe uses six peppers, including the seeds, which might sound like a lot, but it doesn’t make the quesadillas overly spicy. However, if you are sensitive to heat or making these quesadillas for kids, you might want to use fewer peppers.

Can I make the quesadillas ahead of time?

For the crispiest texture, quesadillas should be assembled and cooked just before serving. However, the chicken mixture can be prepared up to two days in advance, cooled, covered, and stored in the refrigerator.

Can leftover quesadillas be frozen?

Yes, the cooked quesadillas can be frozen for up to three months. To serve, defrost them in the refrigerator and then reheat, wrapped in foil, in an oven preheated to 350°F (175°C) until hot, which should take 15 to 20 minutes.

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Chipotle Chicken Quesadillas

These quesadillas are filled with gooey melted cheddar, shredded chicken and a smoky chipotle-tomato sauce.

Servings: 6
Prep Time: 30 Minutes
Cook Time: 15 Minutes
Total Time: 45 Minutes

Ingredients

  • 3 tablespoons olive oil
  • 1 large red onion, chopped (about 1½ cups)
  • 4 garlic cloves, minced
  • ⅓ cup minced chipotle peppers in adobo sauce (you'll need about 6 chilis)
  • 4 vine-ripened tomatoes (about 1¼ pounds), seeded and diced
  • 3 scallions, thinly sliced
  • 2 tablespoons honey
  • 2½ cups cooked shredded chicken (white and/or dark meat)
  • 1 teaspoon salt
  • ½ cup chopped cilantro
  • 6 10-inch diameter flour tortillas
  • 4 cups shredded sharp cheddar cheese
  • Sour cream, for serving (optional)
  • Lime wedges, for serving (optional)

Instructions

  1. In a large sauté pan, heat the olive oil over medium heat. Add the onion and sauté until soft, about 5 minutes. Add the garlic and cook 1 minute more. Stir in the chipotle peppers and tomatoes. Cook until most of the liquid from the tomatoes has evaporated and the mixture is thickened, stirring often, about 20 minutes. Stir in the scallions, honey, chicken, salt and cilantro. Keep warm.
  2. Heat a sauté pan over medium heat and spray lightly with nonstick cooking spray. Lay a tortilla in the pan and heat until hot to the touch but not crisp (air pockets may form). Flip the tortilla over, then sprinkle ⅔ cup of the cheese evenly overtop, being careful to keep it off the pan. Spread a generous ½ cup of the chicken mixture over half of the tortilla. When the cheese is mostly melted, fold the tortilla over to cover the filling and form a half-moon shape. Cook until the tortilla is crisp and golden and the cheese is melted, adjusting the heat as necessary, a few minutes per side. Repeat with the remaining tortillas. Let the quesadillas rest a few minutes to allow the filling to set, then cut into wedges. Serve with sour cream and lime wedges, if desired.
  3. Note: If you have a large griddle, use that to make the quesadillas so you can make a few at a time. Also, be sure to serve your quesadillas hot of the pan (or off the griddle), otherwise, they’ll get soggy and the cheese will harden. If this does happen, you can pop them in a 350°F degree oven to heat them up, but they won’t be as crisp and gooey as they are fresh.
  4. Note: The nutritional information does not include the optional ingredients.
  5. Make-Ahead/Freezing Instructions: For the crispiest texture, the quesadillas should be assembled and cooked just before serving. However, the chicken mixture can be prepared up to two days in advance, cooled, covered, and stored in the refrigerator. Leftover quesadillas can be frozen for up to three months. To serve, defrost them in the refrigerator and then reheat, wrapped in foil, in an oven preheated to 350°F (175°C) until hot, which should take 15 to 20 minutes.

Nutrition Information

Powered by Edamam

  • Serving size: 1 quesadilla
  • Calories: 694
  • Fat: 45 g
  • Saturated fat: 19 g
  • Carbohydrates: 39 g
  • Sugar: 11 g
  • Fiber: 3 g
  • Protein: 34 g
  • Sodium: 1383 mg
  • Cholesterol: 121 mg

This website is written and produced for informational purposes only. I am not a certified nutritionist and the nutritional data on this site has not been evaluated or approved by a nutritionist or the Food and Drug Administration. Nutritional information is offered as a courtesy and should not be construed as a guarantee. The data is calculated through an online nutritional calculator, Edamam.com. Although I do my best to provide accurate nutritional information, these figures should be considered estimates only. Varying factors such as product types or brands purchased, natural fluctuations in fresh produce, and the way ingredients are processed change the effective nutritional information in any given recipe. Furthermore, different online calculators provide different results depending on their own nutrition fact sources and algorithms. To obtain the most accurate nutritional information in a given recipe, you should calculate the nutritional information with the actual ingredients used in your recipe, using your preferred nutrition calculator.

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Comments

  • Another winner!! Absolutely delicious — and the chipotle peppers go so well with the honey. Thanks Jenn! You’re the best!!

    • — Lyne H on December 30, 2023
    • Reply
  • been using this recipe for a year and it’s an absolute win. i’ve never even bothered reviewing recipes but this one deserves it! Five stars.
    For my fellow Australians (who have limited access to whole peppers) use a whole jar of la costena chipotles in adobo from your local woolies or coles. works just fine 🙂

    • — Lilly M-c on December 21, 2023
    • Reply
  • What a great way to use leftover turkey! Love the bite and flavor that the chipotle chiles add. As I did the first time I made these (thanks helpful commenters), I finished them in the oven after spraying the tortillas with olive oil oil @ 430°–8 min. per side.
    Thank you as always, Jenn.

    • — John M. on November 30, 2023
    • Reply
  • These were DELICIOUS!!!! Made with a side of guac…added to the repeat list!

    • — Kristie (Senoia, GA) on November 26, 2023
    • Reply
  • This was ridiculously good, and very easy! Perfect blend of flavors! We had some nice Jersey tomatoes, which really made it special. Will definitely be making this again!
    My wife works in Washington DC during the week, and usually comes home Thursday night. I try to have something nice for her when she gets home, and your weekly email is often my source. Thanks Jenn, love your stuff!

    • — Fred on July 15, 2023
    • Reply
  • Our favourite chicken quesadillas! Love the chipotle peppers.

    • — Joanne on June 26, 2023
    • Reply
  • Are you supposed to deseed the peppers?

    • — Marie on May 19, 2023
    • Reply
    • No, no need to remove the seeds.

      • — Jenn on May 22, 2023
      • Reply
  • This is the first recipe I tried of yours. WOW! Fantastic.
    Thank you so much for sharing.

    • — Kerri on May 12, 2023
    • Reply
  • Oh my gosh, these are THAT good! I make quesadillas all the time, but these are special. The chipotle peppers are just the right touch, and the honey is the secret ingredient (I only added 1 tbs instead of 2). So excited to have this recipe. Thank you.

    • — Eileen Der Aris on April 23, 2023
    • Reply
  • I cooked and loved the Peruvian style roast chicken and green sauce, used the left over chicken to make this dish – huge success. The green sauce worked well with both dishes and just about everything!!

    I recently came across your site and have already successfully cooked 5 of the dishes and will continue to cook more. Your clear directions and videos make cooking easy!!
    A big thank you Jen, from me and my husband.

    • — Christine Bridges on March 27, 2023
    • Reply

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