Apple Muffins

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These wholesome apple muffins are packed with spice and everything nice—just what you need for a cozy start to the day.

Apple muffins on a wire rack.

Adapted from King Arthur Flour, these delicious apple muffins are made partially with whole wheat flour, which gives them a wholesome, nutty flavor and toasty-brown color. They’re also chockfull of tart apples and enriched with yogurt, so no one could ever accuse them of being cupcakes pretending to be muffins. The recipe calls for a full tablespoon of cinnamon along with a hint of nutmeg and cloves, so your house will smell amazing while the muffins bake. But the best part of this apple muffin recipe might just be the muffin top; the brown sugar gives the lids an irresistible crunch. If you’d prefer something that you can slice and share, my apple bread has similar flavors and is equally crave-worthy.

“I made these gorgeous muffins, they are easy to make, so very light and tasty. Perfect for the autumnal or winter season.”

Patricia

What You’ll Need To Make Apple Muffins

Muffin ingredients including butter, baking powder, and egg.
  • Butter: Provides richness and flavor to the muffins.
  • Granulated Sugar and Brown Sugar: Sweeten the muffins while adding moisture and subtle caramel-like flavor.
  • Egg: Binds the ingredients together and provides structure to the muffins.
  • Plain Low-Fat Yogurt or Greek Yogurt: Adds moisture and richness to the muffins and interacts with the baking soda to help them rise.
  • Whole Wheat Flour and All-purpose Flour: The foundation of the muffins. The use of whole wheat flour provides a wholesome, nutty flavor and lovely color.
  • Baking Powder and Baking Soda: Leavening agents that help the muffins rise and give them a fluffy texture.
  • Cinnamon, Nutmeg, and Cloves: Infuse the muffins with warm, aromatic spices that complement the apples.
  • Apples: Provide moisture, sweetness, and texture to the muffins. Make sure to use baking apples that are firm enough to hold their shape when baked. See the FAQ’s for what brands of apples are considered best for baking.
  • Brown Sugar: Adds a crunchy, sweet topping to the muffins enhancing the flavor and texture.
  • Jump to the printable recipe for precise measurements

Step-by-Step Instructions

To begin, combine the butter, sugar, and brown sugar.

creaming butter and sugar

Beat until light and fluffy.

Butter and sugar mixture in a bowl.

Add the egg.

Egg in a bowl with a butter and sugar mixture.

Then beat again.

Butter, sugar, and egg mixture in a bowl.

Add the yogurt.

Yogurt in a bowl with a butter mixture.

Beat again.

Yogurt and butter mixture in a bowl.

Add all the dry ingredients right to the bowl.

Dry ingredients in a bowl with a yogurt mixture.

Mix until just combined. Note that the batter will be very thick.

Bowl of muffin batter.

Add the diced apples.

diced apples in batter

Then fold them in.

batter with apples

Use an ice cream scoop to transfer the batter to a muffin tin.

apple muffin batter in muffin pan

Sprinkle the tops generously with brown sugar.

apple muffin batter and brown sugar topping in muffin pan

Bake for about 25 minutes.

apple muffins fresh out of the oven

Let the muffins cool in the pan for about 5 minutes, then transfer them to a rack to cool completely.

Frequently Asked Questions

What are baking apples?

Baking apples, such as Granny Smith, Honeycrisp, Gala, Jonagold, Jonathan, and Golden Delicious varieties, are firm and tart, making them ideal for baking because they hold their shape and retain their texture during the baking process. Their tartness balances the sweetness of baked goods, and their firmness prevents them from turning mushy, ensuring a pleasing texture in baked treats. They’re also ideal in apple pie and apple crisp.

Can I use all whole wheat flour?

Using all whole wheat flour may make the muffins dry. If you have white whole wheat flour, that would work nicely. If not, I’d suggest using 1½ cups of whole wheat and ½ cup all-purpose flour. 

Can I make apple muffins ahead? And how should I store apple muffins?

Because the apples help to keep them moist, the muffins will keep nicely for several days. Store them at room temperature in an airtight container lined with a sheet of paper towels. Arrange the muffins in a single layer and cover them with another sheet of paper towels to absorb any excess moisture.

Can I freeze apple muffins?

Absolutely! The muffins can be frozen in an airtight container or sealable plastic bag for up to 3 months. Thaw for 3 to 4 hours on the countertop before serving. To reheat, wrap individual muffins in aluminum foil and place in a preheated 350° oven until warm.

Apple muffins on a wire rack.

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Print

Spiced Apple Muffins

Adapted from King Arthur Flour
These wholesome apple muffins are packed with spice and everything nice—just what you need for a cozy start to the day.
Servings: 12 muffins
Prep Time: 15 minutes
Cook Time: 25 minutes
Total Time: 45 minutes

Ingredients 

  • ½ cup (8 tablespoons) unsalted butter, at room temperature
  • ½ cup granulated sugar
  • ¼ cup (packed) dark brown sugar
  • 1 large egg
  • 1 cup plain low-fat yogurt or Greek yogurt
  • 1 cup whole wheat flour, spooned into measuring cup and leveled off
  • 1 cup all-purpose flour, spooned into measuring cup and leveled off
  • 1 teaspoon baking powder
  • 1 teaspoon baking soda
  • ½ teaspoon salt
  • 1 tablespoon ground cinnamon
  • ½ teaspoon ground nutmeg
  • ¼ teaspoon ground cloves
  • 2 cups peeled cored, and finely chopped baking apples (you'll need 2 large apples)

For Topping

  • 6 tablespoons (packed) dark brown sugar

Instructions

  • Preheat the oven to 375°F (190°C). Grease a 12-cup muffin pan with butter or spray with non-stick cooking spray.
  • In the bowl of an electric mixer, beat together the butter, granulated sugar and brown sugar until fluffy, 1 to 2 minutes. Scrape down the sides of the bowl with a rubber spatula.
  • Add the egg and mix well, stopping to scrape the bowl if necessary.
  • Beat in the yogurt. The batter will look grainy.
  • Add the flours, baking powder, baking soda, salt, cinnamon, nutmeg and cloves. Beat on low speed until just combined. The batter will be very thick.
  • Add the chopped apples and mix until just combined. Do not over-mix.
  • Use an ice-cream scooper or large spoon to divide the batter evenly among the prepared muffin cups. The cups should be full. Sprinkle the 6 tablespoons of brown sugar evenly over top.
  • Bake the muffins for 25 to 30 minutes, or until a toothpick inserted into the center of a muffin comes out clean.
  • Remove the muffins from the oven, cool them for 5 minutes in the pan, then turn them out onto a rack to finish cooling completely.
  • Freezer-Friendly Instructions:
    The muffins can be frozen in an airtight container or sealable plastic bag for up to 3 months. Thaw for 3 to 4 hours on the countertop before serving. To reheat, wrap individual muffins in aluminum foil and place in a preheated 350°F (175°C) oven until warm.

Nutrition Information

Serving: 1gCalories: 221kcalCarbohydrates: 33gProtein: 4gFat: 9gSaturated Fat: 5gCholesterol: 37mgSodium: 207mgFiber: 2gSugar: 16g

This website is written and produced for informational purposes only. I am not a certified nutritionist and the nutritional data on this site has not been evaluated or approved by a nutritionist or the Food and Drug Administration. Nutritional information is offered as a courtesy and should not be construed as a guarantee. The data is calculated through an online nutritional calculator, Edamam.com. Although I do my best to provide accurate nutritional information, these figures should be considered estimates only. Varying factors such as product types or brands purchased, natural fluctuations in fresh produce, and the way ingredients are processed change the effective nutritional information in any given recipe. Furthermore, different online calculators provide different results depending on their own nutrition fact sources and algorithms. To obtain the most accurate nutritional information in a given recipe, you should calculate the nutritional information with the actual ingredients used in your recipe, using your preferred nutrition calculator.

Comments

  • 5 stars
    I grated the apples instead. Worked well. Excellent recipe.

  • Hi Jen,

    I know you specifically said plain yoghurt, not Greek style but what happens if I use Greek yoghurt? Love your recipes..I tried your Best Blueberry Muffin recipe, they turned out so good I bought your cookbook immediately after.

    • So glad you like the recipes and thanks for your support with the cookbook! You can use Greek yogurt here but you’ll need to thin it out with a little bit of milk. Hope you like the muffins! 🙂

    • 5 stars
      Hi Jen,
      I love nearly all your recipes that i have tried and if it fails it most likely because of a substitution i made. These muffins are great. my sons, 5 and 3 yo, that don’t like spiced baked goods have two each already! Thank you for your easy to follow recipes.

  • Hi Jen,

    I am a big fan of yours. I loved the banana nut muffin recipe so I thought I would try this recipe too. I have a few questions. When you say brown sugar, do you mean light brown sugar or dark brown sugar? Or does it make any difference?
    Also, do you think I can add walnuts with honey and cinnamon as the topping? I love nuts. Will it work with this recipe?

    Lucy

    • — Lucy Sim Conway
    • Reply
    • Hi lucy, so glad you like the recipes! This recipe calls for dark brown sugar, but if you only have light brown on hand, that will work as well. And yes, you can add the topping that you mentioned (just use that in place of the brown sugar that tops the muffins). Enjoy!

  • What kind of apples do you personally use? It looks like you have 2 different kinds in the picture.

    • Hi Angie, I think I used a Granny Smith and a Golden Delicious Any of the following would be great choices: Fuji, Granny Smith, Jonagolds, Jonathans, Golden Delicious, Gala, or Honey Crisp. Hope you enjoy the muffins!

  • Hi Jenn, it’s me again – the broken record who keeps singing your praises. These apple muffins were FANTASTIC. I hadn’t made muffins in eons because I went through a phase of baking joyless low-fat, low-sugar, rubbery muffins. Well, my muffin-baking days are back, baby!!! Apple-y, tender, not too sweet, good texture. The only change I made was that I sprinkled maple sugar instead of brown sugar on top.

    ALL your recipes are keepers, Jenn. Thank you for everything you do! xo

  • 5 stars
    I made a double batch this morning. (I’m drowning in fresh organic Ambrosia apples from a local orchard). These were wonderful. I sent half a dozen muffins over to elderly neighbors who called raving about the muffins. My family loved them too. So yet another winner Jenn.

  • 5 stars
    Hi! I have an overflow of pears from the pear tree in my front yard. Could I use these instead of apples?
    Thank you!

    • Hi Maria, I suspect pears should work, but because all fruits bake up a bit differently, I can’t guarantee it. I’d love to hear how they turn out if you try them!

  • 5 stars
    This recipe was just perfect! Not too sweet and very moist.

  • 5 stars
    Hi Jenn, I just discovered your site and really like what I see! Found your recipe for apple spice muffins. They turned out awesome. Like a previous review, I didn’t have yogurt either and used 1 cup of sour cream. I also added 1/2 cup of chopped walnuts. I will definitely be making these again, Thanks for sharing the recipe!
    Best Regards Trish

  • If we didn’t have yogurt in the fridge, can we replace the yogurt with buttermilk? Thank you!

    • Yes, Trish, the finished muffins may not be quite as dense, but I think buttermilk should work. Hope you enjoy!

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