Apple Muffins

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These wholesome apple muffins are packed with spice and everything nice—just what you need for a cozy start to the day.

Apple muffins on a wire rack.

Adapted from King Arthur Flour, these delicious apple muffins are made partially with whole wheat flour, which gives them a wholesome, nutty flavor and toasty-brown color. They’re also chockfull of tart apples and enriched with yogurt, so no one could ever accuse them of being cupcakes pretending to be muffins. The recipe calls for a full tablespoon of cinnamon along with a hint of nutmeg and cloves, so your house will smell amazing while the muffins bake. But the best part of this apple muffin recipe might just be the muffin top; the brown sugar gives the lids an irresistible crunch. If you’d prefer something that you can slice and share, my apple bread has similar flavors and is equally crave-worthy.

“I made these gorgeous muffins, they are easy to make, so very light and tasty. Perfect for the autumnal or winter season.”

Patricia

What You’ll Need To Make Apple Muffins

Muffin ingredients including butter, baking powder, and egg.
  • Butter: Provides richness and flavor to the muffins.
  • Granulated Sugar and Brown Sugar: Sweeten the muffins while adding moisture and subtle caramel-like flavor.
  • Egg: Binds the ingredients together and provides structure to the muffins.
  • Plain Low-Fat Yogurt or Greek Yogurt: Adds moisture and richness to the muffins and interacts with the baking soda to help them rise.
  • Whole Wheat Flour and All-purpose Flour: The foundation of the muffins. The use of whole wheat flour provides a wholesome, nutty flavor and lovely color.
  • Baking Powder and Baking Soda: Leavening agents that help the muffins rise and give them a fluffy texture.
  • Cinnamon, Nutmeg, and Cloves: Infuse the muffins with warm, aromatic spices that complement the apples.
  • Apples: Provide moisture, sweetness, and texture to the muffins. Make sure to use baking apples that are firm enough to hold their shape when baked. See the FAQ’s for what brands of apples are considered best for baking.
  • Brown Sugar: Adds a crunchy, sweet topping to the muffins enhancing the flavor and texture.
  • Jump to the printable recipe for precise measurements

Step-by-Step Instructions

To begin, combine the butter, sugar, and brown sugar.

creaming butter and sugar

Beat until light and fluffy.

Butter and sugar mixture in a bowl.

Add the egg.

Egg in a bowl with a butter and sugar mixture.

Then beat again.

Butter, sugar, and egg mixture in a bowl.

Add the yogurt.

Yogurt in a bowl with a butter mixture.

Beat again.

Yogurt and butter mixture in a bowl.

Add all the dry ingredients right to the bowl.

Dry ingredients in a bowl with a yogurt mixture.

Mix until just combined. Note that the batter will be very thick.

Bowl of muffin batter.

Add the diced apples.

diced apples in batter

Then fold them in.

batter with apples

Use an ice cream scoop to transfer the batter to a muffin tin.

apple muffin batter in muffin pan

Sprinkle the tops generously with brown sugar.

apple muffin batter and brown sugar topping in muffin pan

Bake for about 25 minutes.

apple muffins fresh out of the oven

Let the muffins cool in the pan for about 5 minutes, then transfer them to a rack to cool completely.

Frequently Asked Questions

What are baking apples?

Baking apples, such as Granny Smith, Honeycrisp, Gala, Jonagold, Jonathan, and Golden Delicious varieties, are firm and tart, making them ideal for baking because they hold their shape and retain their texture during the baking process. Their tartness balances the sweetness of baked goods, and their firmness prevents them from turning mushy, ensuring a pleasing texture in baked treats. They’re also ideal in apple pie and apple crisp.

Can I use all whole wheat flour?

Using all whole wheat flour may make the muffins dry. If you have white whole wheat flour, that would work nicely. If not, I’d suggest using 1½ cups of whole wheat and ½ cup all-purpose flour. 

Can I make apple muffins ahead? And how should I store apple muffins?

Because the apples help to keep them moist, the muffins will keep nicely for several days. Store them at room temperature in an airtight container lined with a sheet of paper towels. Arrange the muffins in a single layer and cover them with another sheet of paper towels to absorb any excess moisture.

Can I freeze apple muffins?

Absolutely! The muffins can be frozen in an airtight container or sealable plastic bag for up to 3 months. Thaw for 3 to 4 hours on the countertop before serving. To reheat, wrap individual muffins in aluminum foil and place in a preheated 350° oven until warm.

Apple muffins on a wire rack.

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Print

Spiced Apple Muffins

Adapted from King Arthur Flour
These wholesome apple muffins are packed with spice and everything nice—just what you need for a cozy start to the day.
Servings: 12 muffins
Prep Time: 15 minutes
Cook Time: 25 minutes
Total Time: 45 minutes

Ingredients 

  • ½ cup (8 tablespoons) unsalted butter, at room temperature
  • ½ cup granulated sugar
  • ¼ cup (packed) dark brown sugar
  • 1 large egg
  • 1 cup plain low-fat yogurt or Greek yogurt
  • 1 cup whole wheat flour, spooned into measuring cup and leveled off
  • 1 cup all-purpose flour, spooned into measuring cup and leveled off
  • 1 teaspoon baking powder
  • 1 teaspoon baking soda
  • ½ teaspoon salt
  • 1 tablespoon ground cinnamon
  • ½ teaspoon ground nutmeg
  • ¼ teaspoon ground cloves
  • 2 cups peeled cored, and finely chopped baking apples (you'll need 2 large apples)

For Topping

  • 6 tablespoons (packed) dark brown sugar

Instructions

  • Preheat the oven to 375°F (190°C). Grease a 12-cup muffin pan with butter or spray with non-stick cooking spray.
  • In the bowl of an electric mixer, beat together the butter, granulated sugar and brown sugar until fluffy, 1 to 2 minutes. Scrape down the sides of the bowl with a rubber spatula.
  • Add the egg and mix well, stopping to scrape the bowl if necessary.
  • Beat in the yogurt. The batter will look grainy.
  • Add the flours, baking powder, baking soda, salt, cinnamon, nutmeg and cloves. Beat on low speed until just combined. The batter will be very thick.
  • Add the chopped apples and mix until just combined. Do not over-mix.
  • Use an ice-cream scooper or large spoon to divide the batter evenly among the prepared muffin cups. The cups should be full. Sprinkle the 6 tablespoons of brown sugar evenly over top.
  • Bake the muffins for 25 to 30 minutes, or until a toothpick inserted into the center of a muffin comes out clean.
  • Remove the muffins from the oven, cool them for 5 minutes in the pan, then turn them out onto a rack to finish cooling completely.
  • Freezer-Friendly Instructions:
    The muffins can be frozen in an airtight container or sealable plastic bag for up to 3 months. Thaw for 3 to 4 hours on the countertop before serving. To reheat, wrap individual muffins in aluminum foil and place in a preheated 350°F (175°C) oven until warm.

Nutrition Information

Serving: 1gCalories: 221kcalCarbohydrates: 33gProtein: 4gFat: 9gSaturated Fat: 5gCholesterol: 37mgSodium: 207mgFiber: 2gSugar: 16g

This website is written and produced for informational purposes only. I am not a certified nutritionist and the nutritional data on this site has not been evaluated or approved by a nutritionist or the Food and Drug Administration. Nutritional information is offered as a courtesy and should not be construed as a guarantee. The data is calculated through an online nutritional calculator, Edamam.com. Although I do my best to provide accurate nutritional information, these figures should be considered estimates only. Varying factors such as product types or brands purchased, natural fluctuations in fresh produce, and the way ingredients are processed change the effective nutritional information in any given recipe. Furthermore, different online calculators provide different results depending on their own nutrition fact sources and algorithms. To obtain the most accurate nutritional information in a given recipe, you should calculate the nutritional information with the actual ingredients used in your recipe, using your preferred nutrition calculator.

Comments

  • Hi Jenn,
    Thank you for this recipe. These muffins are simply delicious! Last night I made your Morning Glory Muffins. Another wonderful muffin recipe! My question is .. how do you store muffins once they are completely cool? I’ve just read .. it’s a good idea to place a sheet of paper towel on the bottom of an airtight container (to absorb any moisture), then place the muffins on top in a single layer, then another sheet of paper towel on top of the muffins. I’ve always used an airtight container (no paper towel) or Ziplock freezer bag (no paper towel) and placed the container/freezer bag in the freezer to keep the muffins fresh, and take them out as needed. What do you do? Thanks so much!

    • — Gail Kielbiski on November 3, 2024
    • Reply
    • Hi Gail, I store them exactly the same way as the first description above. Glad you like them!

  • Hello! What did I do wrong, when the muffins raised first (even over the rim) but then halfway through started to fall back in and ended up being very flat. I don’t think I over-stirred them, I was very careful with that, just few seconds, when the flower was incorporated. Thank you!

    • — Helene on October 20, 2024
    • Reply
    • Hi Helene, that sounds strange. Did you make any ingredient substitutions or adjustments to the recipe? Did you put the muffins in when the oven was still preheating?

  • Thinking of making these today. Question- is cinnamon flavour intense? There is a full tbsp of cinnamon, wondering if anyone can provide feedback? thanks!

    • — Isabelle on September 20, 2024
    • Reply
    • Hi Isabelle, It’s not overwhelming at all, but feel free to cut back a bit.

  • 5 stars
    These muffins are great! I had a couple of Honeycrisp apples that weren’t the greatest so, as usual, I scoured Jenn’s website for recipes. They are fall in a muffin, as my husband said. Love the warm spices and I like the fact that this uses whole wheat flour which gives it a little more nutritional value. I will be freezing the rest and am looking forward to enjoying an apple muffin with a PSL this fall!

    • — Lilee on August 11, 2024
    • Reply

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